2006
ncbi-tools6 (6.1.20061015-1) unstable; urgency=low
* New upstream release. * Don't bother linking against indirectly used system libraries. * Update man pages.
-- Aaron M. Ucko <ucko@debian.org> Sun, 22 Oct 2006 19:32:02 -0400
ncbi-tools6 (6.1.20060507-3) unstable; urgency=low
* Drop transitional packages, which are now entirely redundant thanks to
the binNMU of clustalx for i386 earlier this June. (Closes: #322059.)
* Migrate to lesstif2, renaming libvibrant6(-dbg) to libvibrant6a(-dbg)
to avoid any possibility of version skew. [Lesstif lacks versioned
symbols, though admittedly so does Vibrant.] (Closes: #374233.)
* Make debian/stamp-setup a dependency of common-configure-indep as well
as common-configure-arch so that building via an immediate call to
"fakeroot debian/rules binary" works properly, per #373971.
* Explicitly build depend on modular versions of all relevant X
libraries, per the other issue in #373971 (and to ensure that the arm
autobuilder's failure mode really can't recur).
-- Aaron M. Ucko <ucko@debian.org> Sat, 24 Jun 2006 09:28:43 -0400
ncbi-tools6 (6.1.20060507-2) unstable; urgency=low
* Version the build-dependency on libxmu-dev to (>= 1:1) to ensure that
we can actually drop -I/usr/X11R6/include and -L/usr/X11R6/lib,
avoiding the failure mode observed on the arm autobuilder.
* Further increase cdbs's minimum required version to the brand new
0.4.40, which automatically sets DEB_DBG_PACKAGE_* appropriately.
-- Aaron M. Ucko <ucko@debian.org> Mon, 29 May 2006 20:42:28 -0400
ncbi-tools6 (6.1.20060507-1) unstable; urgency=low
* New upstream release (issued on May 26, but from older sources).
* Drop obsolete -I/usr/X11R6/include and -L/usr/X11R6/lib flags.
* Rework inter-package relationships with the help of dpkg-dev 1.13.19.
* Migrate remaining shared library support files (including vibrate) to
ncbi-data, as they're conveniently all architecture-independent.
* Add cleanasn (new) to the list of applications to build, and give it a
man page.
* Update existing man pages.
* Increase the cdbs requirement to 0.4.39-0.1, and drop workarounds for
(some?) older versions.
* Switch to debhelper compatibility level 5, with its reworked -dbg
package handling.
* Standards-Version: 3.7.2.
-- Aaron M. Ucko <ucko@debian.org> Mon, 29 May 2006 16:50:27 -0400
ncbi-tools6 (6.1.20060301-1) unstable; urgency=low
* New (relatively, anyway ;-P) upstream release.
* (Build-)depend directly on libgl(u)1-mesa-dev by default (but keep
the alternate [build-]dependencies on virtual packages, of course).
* Add insdseqget to the list of applications to build.
* Stop installing wwwblast.h, which is private to code we don't even
build.
* Update man pages (and add one for insdseqget, forked from gbseqget's).
-- Aaron M. Ucko <ucko@debian.org> Sun, 16 Apr 2006 12:52:44 -0400
ncbi-tools6 (6.1.20051206-1) unstable; urgency=low
* New upstream release.
* Temporarily switch to pmake (added to Build-Depends) for upstream's
makefiles, as GNU make 3.81.b4 gets mysteriously confused when trying
to build from them (but, oddly, only when invoked from debian/rules).
* Add "new" blastall_old executable to the blast2 package.
* Reshuffle documents slightly, and make sure to register all top-level
HTML documents with doc-base.
* Loosen libncbi6's dependency on ncbi-data to accommodate binary-only
NMUs.
-- Aaron M. Ucko <ucko@debian.org> Thu, 12 Jan 2006 18:50:27 -0500
2005
ncbi-tools6 (6.1.20050828-1) unstable; urgency=low
* New upstream release
- Adds two new programs: sbtedit (in ncbi-tools-x11) and trna2sap
(in ncbi-tools-bin).
* Drop obsolete alternative (build-)dependencies on ancient versions of
xlibs-dev, and silly build-dependency on libglu1-xorg | libglu1c2, and
resync libvibrant-dev's dependencies properly.
* Add man pages for the new programs, and clean up and update others as
needed.
-- Aaron M. Ucko <ucko@debian.org> Fri, 4 Nov 2005 16:41:18 -0500
ncbi-tools6 (6.1.20050605-2) unstable; urgency=low
* Adjust default libglu-dev to libglu1-xorg-dev to avoid confusing the
autobuilders.
-- Aaron M. Ucko <ucko@debian.org> Fri, 15 Jul 2005 23:37:06 -0400
ncbi-tools6 (6.1.20050605-1) unstable; urgency=low
* New upstream release.
* Enable asn2asn via VIB rather than unnecessarily modifying
makedemo.unx, and add (and document) nps2gps and trna2tbl along
the way.
* Make sure to build with libglu1c2 for the C++ transition.
* Don't set DEB_DH_SHLIBDEPS_ARGS; it's not necessary with current
versions of dpkg and cdbs, and -L isn't actually additive anyway.
* Bump standards-version to 3.6.2 (no changes needed).
-- Aaron M. Ucko <ucko@debian.org> Fri, 15 Jul 2005 19:03:40 -0400
ncbi-tools6 (6.1.20050429-1) unstable; urgency=low
* New upstream release.
* Add and document asn2all, asn2fsa, asnval, and gene2xml, even though
makedis.csh still omits them.
* Make Nentrez and Psequin available under the saner names entrez and
sequin.
* Tweak debian/rules to better handle "draft" builds from subversion.
-- Aaron M. Ucko <ucko@debian.org> Tue, 17 May 2005 17:43:14 -0400
ncbi-tools6 (6.1.20041020-3) unstable; urgency=low
* Fix FTBFS under GCC 4.0 caused by inconsistent use of "static" on
functions. (Closes: #295110.)
* Add a watch file, now that we can. (Upstream's layout needs version=3.)
-- Aaron M. Ucko <ucko@debian.org> Sun, 27 Mar 2005 12:00:15 -0500
ncbi-tools6 (6.1.20041020-2) unstable; urgency=low
* Add spidey to ncbi-tools-bin by Steffen Moeller's request, and
incorporate some documentation he supplied for it. (Closes: #291895.)
-- Aaron M. Ucko <ucko@debian.org> Tue, 25 Jan 2005 18:16:49 -0500
2004
ncbi-tools6 (6.1.20041020-1) unstable; urgency=low
* New upstream release; debian/* resynched as necessary.
- Fixes Vibrant invisible text bug!
* Take advantage of menu 2.1.8's support for multiple required packages.
-- Aaron M. Ucko <ucko@debian.org> Mon, 1 Nov 2004 20:07:56 -0500
ncbi-tools6 (6.1.20040616-1) unstable; urgency=low
* New upstream release.
* debian/blast2.docs: adjusted for new arrangement (a separate
source-tree directory full of HTML files).
* debian/{control,lib*-dbg.install,rules}: switch to new-style -dbg
packages containing just the stripped-out symbols.
* debian/{installman,ncbi-tools-bin.install,rules}: upstream has dropped
f(asta)merge.
-- Aaron M. Ucko <ucko@debian.org> Sat, 26 Jun 2004 00:18:09 -0400
ncbi-tools6 (6.1.20040505-1) unstable; urgency=low
* New upstream release.
* debian/rules:
- set BLAST_VERSION from demo/.BLAST_VERSION rather than parsing
tools/blastdef.h.
-- Aaron M. Ucko <ucko@debian.org> Sat, 15 May 2004 17:49:45 -0400
ncbi-tools6 (6.1.20040204-3) unstable; urgency=low
* Update X-related (build-)dependencies per the changes in 4.3.
* Reunite the Vibrant packages, with libvibrant.so.6 and
libncbicn3d.so.6 always pointing at the OpenGL-enabled versions, now
that xlibmesa-gl merely suggests the heavyweight packages containing
acceleration modules.
* As such, tighten shlibdeps for libvibrant6 to avoid possible trouble.
-- Aaron M. Ucko <ucko@debian.org> Wed, 10 Mar 2004 18:48:26 -0500
ncbi-tools6 (6.1.20040204-2) unstable; urgency=low
* debian/{libncbi6-dev,rules}: account for new include subdirectories.
-- Aaron M. Ucko <ucko@debian.org> Sun, 8 Feb 2004 22:42:12 -0500
ncbi-tools6 (6.1.20040204-1) unstable; urgency=low
* New upstream release.
* debian/copyright: expand public domain notice to full length.
* debian/*.install: install newly added files.
* debian/rules:
- supply appropriate -L args to dh_shlibdeps (accidentally lost when
converting to CDBS).
- various minor cleanups.
* demo/debruijn.c: fix fencepost error.
* desktop/bspview.c, vibrant/netscape.c: launch sensible-browser rather
than netscape.
* doc/man/blast.1: document new blast2 executable.
* doc/man/debruijn.1: new, based on help output.
* make/makeshlb.unx: add dependency info for libblast(api).
-- Aaron M. Ucko <ucko@debian.org> Fri, 6 Feb 2004 22:03:25 -0500
2003
ncbi-tools6 (6.1.20031028-1) unstable; urgency=low
* New upstream release.
* debian/blast2.docs: follow README.* -> *.txt renaming.
* debian/libncbi6-dev.install: add new headers scoremat.h and wwwblast.h.
* debian/installman: new; factored out of debian/rules, and enhanced
to look in doc/man before debian/man and tweak pages as needed.
* debian/instdoc: removed (not used since conversion to CDBS).
* debian/man/*: remove pages now committed upstream.
* debian/{ncbi-tools-bin.files,rules}: remove cdscan (obsolete).
* debian/rules: run new debian/installman script.
* debian/vibrant/vibwndws.c: add a weak declaration of Nlm_Main
(and code to complain if it's not satisfied) here too.
-- Aaron M. Ucko <ucko@debian.org> Mon, 10 Nov 2003 22:51:03 -0500
ncbi-tools6 (6.1.20030421-6) unstable; urgency=low
* debian/control: Fix libncbi6-dbg to depend directly on libncbi6
rather than on the transitional ncbi-tools6 package.
* debian/{control,lib*-dbg.install,rules}: While I'm at it, move
unstripped libraries from /usr/lib/ncbi-tools-dbg to /usr/lib/debug.
-- Aaron M. Ucko <ucko@debian.org> Fri, 17 Oct 2003 23:24:32 -0400
ncbi-tools6 (6.1.20030421-5) unstable; urgency=low
* debian/control:
- Downgrade oldlibs packages (ncbi-tools6 and vibrant6) to priority
extra, per override.
- Bump CDBS build-dependency to >= 0.4.12.
- Drop redundant entries from build-depends-indep.
* debian/libncbi6.doc-base: Actually supply the documentation
directory's current name. (Closes: #215398.)
* debian/rules: Take advantage of CDBS 0.4.12's support for -dbg packages.
* corelib/ncbimain.c: Use an __attribute__((weak)) declaration for
Nlm_Main rather than a dummy implementation + #pragma weak.
* vibrant/shim3d.c: Likewise for Cn3D_GetCurrentOGLData.
-- Aaron M. Ucko <ucko@debian.org> Sun, 12 Oct 2003 11:18:21 -0400
ncbi-tools6 (6.1.20030421-4) unstable; urgency=low
* debian/rules: compile with -mieee on Alpha to fix platform-specific
FPEs. (Closes: #127224).
* doc/README.bls: updated to latest upstream version (which includes the
missing release notes for 2.2.6).
-- Aaron M. Ucko <ucko@debian.org> Tue, 2 Sep 2003 11:13:09 -0400
ncbi-tools6 (6.1.20030421-3) unstable; urgency=low
* debian/control:
- Bump Standards-Version to 3.6.1 (no changes needed).
- blast2, ncbi-tools-bin: Suggest libvibrant6 rather than vibrant6.
- libvibrant6-gl{,-dev}, ncbi-tools-x11: lower priority to extra due
to conflicts with libvibrant6-nogl, which is optional.
-- Aaron M. Ucko <ucko@debian.org> Fri, 22 Aug 2003 20:21:56 -0400
ncbi-tools6 (6.1.20030421-2) unstable; urgency=low
* The "overdue cleanup" release.
* general (debian/*, make/makeshlb.unx):
- Rename library packages to start with "lib"; ncbi-tools6 and vibrant6
are now dummy forwarding packages.
- Move libvibgif.so.6 to libncbi6, since it's independent of X.
- Split GL and non-GL variants of libvibrant and libncbicn3d into
separate packages.
- Standardize on the network version of the Entrez 1 access library
(libncbiNacc), if only for the sake of other libraries that need any
of the three variants; the CDROM-only version's not so useful
nowadays, and the combo version seems to misfire without the CDs.
Note that all three remain available in static form.
- Handle the circular relationship between libncbiNacc and libnetentr by
linking the PIC version of libnetentr.a into libncbiNacc.so and making
libnetentr.so.6 merely another link to libncbiNacc.so.6. (Kludge.)
- Set up proper shared library dependencies, now that it is possible to
do so uniquely.
- Now compliant with Policy 3.6.0.
* connect/ncbi_http_connector.c: Don't half-close sockets after sending
headers, as we can't always successfully read from them afterwards
(due to broken firewalls?).
* debian/rules:
- Switch to CDBS, despite upstream's funky build system.
- Stop imposing the obsolete menu icon color restriction.
-- Aaron M. Ucko <ucko@debian.org> Mon, 28 Jul 2003 20:11:26 -0400
ncbi-tools6 (6.1.20030421-1) unstable; urgency=low
* New upstream release.
* api/aliread.c: avoid char vs. EOF comparisons.
* debian/{blast2,ncbi-tools6-dev}.docs: package new upstream docs.
* debian/control:
- Change section to devel.
- Bump standards version to 3.5.9 (already compliant).
- Change preferred libpng-dev to libpng12-dev (12-0-dev went away).
* debian/man/Psequin.1: sequin seems to take options after all;
(very roughly) document them.
* debian/man/{asn2gb,blast,fastacmd,gbseqget,gil2bin,tbl2asn}.1:
- Update to reflect current help output.
* debian/rules: add bl2seq to VIB so we still actually build it.
* demo/gil2bin.c: #include <blast.h> for GetGisFromFile prototype.
-- Aaron M. Ucko <ucko@debian.org> Sun, 27 Apr 2003 12:41:48 -0400
ncbi-tools6 (6.1.20021213-5) unstable; urgency=low
* debian/control: Build-Conflict on xlibmesa-glu-dev (<< 4.2.1-6), and
drop corresponding workarounds. (See #178310 and #178374.)
-- Aaron M. Ucko <ucko@debian.org> Tue, 25 Feb 2003 23:44:39 -0500
ncbi-tools6 (6.1.20021213-4) unstable; urgency=low
* Oops, add a dependency on xlibmesa-gl-dev|libgl-dev because
xlibmesa-glu-dev doesn't seem to depend on it....
* Likewise for xlibmesa3-glu | libglu1, due to #178310.
* Still no (intentional) changes in actual content relative to
6.1.20021213-2.
-- Aaron M. Ucko <ucko@debian.org> Fri, 24 Jan 2003 22:07:51 -0500
ncbi-tools6 (6.1.20021213-3) unstable; urgency=low
* Update OpenGL deps to xlibmesa-glu-dev|libglu-dev.
* Hack debian/rules to give blast2 a more meaningful version number.
* Finally rename *.files to *.install and change dh_movefiles -a to
dh_install -a --autodest --list-missing --sourcedir=debian/tmp. (Drop
ncbi-data.files in favor of installing directly into debian/ncbi-data.)
* Add lintian overrides for menu-icon-missing warnings.
-- Aaron M. Ucko <ucko@debian.org> Fri, 24 Jan 2003 14:43:59 -0500
ncbi-tools6 (6.1.20021213-2) unstable; urgency=low
* Address char-signedness issues. (Closes: #177392)
-- Aaron M. Ucko <ucko@debian.org> Tue, 21 Jan 2003 21:04:50 -0500
2002
ncbi-tools6 (6.1.20021213-1) unstable; urgency=low
* New upstream release. (Man pages updated.)
* Change preferred libpng-dev to libpng12-0-dev rather than libpng3-dev
(which is a dummy package these days).
* Abandon plans for switching to lesstif2, as Vibrant seems to work
better with lesstif1.
-- Aaron M. Ucko <ucko@debian.org> Tue, 17 Dec 2002 22:34:26 -0500
ncbi-tools6 (6.1.20021119-1) unstable; urgency=low
* New upstream release. (Man pages updated accordingly.) * Update for policy 3.5.8: move menu entries to Apps/Science per #162812. * Indicate options in man pages with \- rather than - per #159872. * Move icons from /usr/X11R6/include/X11/pixmaps to /usr/share/pixmaps.
-- Aaron M. Ucko <ucko@debian.org> Thu, 21 Nov 2002 09:05:38 -0500
ncbi-tools6 (6.1.20020828-2) unstable; urgency=low
* Try to use madvise only if MADV_NORMAL is actually defined.
-- Aaron M. Ucko <ucko@debian.org> Thu, 5 Sep 2002 10:49:01 -0400
ncbi-tools6 (6.1.20020828-1) unstable; urgency=low
* New upstream release.
* Update man pages based on current help output.
* Go to standards version 3.5.7 (support "noopt" rather than "debug" in
DEB_BUILD_OPTIONS).
* Strictly speaking, the ABI changes should necessitate a new soname,
but no external Debian packages seem to use the affected interfaces,
so I'll be lazy. You may need to rebuild any local binaries you have.
(Conflict with old versions of our binary packages, though.)
-- Aaron M. Ucko <ucko@debian.org> Wed, 4 Sep 2002 20:30:31 -0400
ncbi-tools6 (6.1.20020426-5) unstable; urgency=low
* Add a second hyphen before (no-)whole-archive to fix the ARM build.
-- Aaron M. Ucko <ucko@debian.org> Mon, 26 Aug 2002 18:41:08 -0400
ncbi-tools6 (6.1.20020426-4) unstable; urgency=low
* Partially migrate to debhelper v4.
* Pave the way for C++ toolkit packages (in progress):
- Provide a weak default definition of Nlm_Main so that our shared
libncbi doesn't bite applications which supply their own main().
- Rename Cn3D to Cn3D-3.0 and register it as an alternative for Cn3D.
* Move to libpng3 (only affects applications).
* Rename fmerge to fastamerge to resolve conflict with fhist.
(Closes: #155791)
-- Aaron M. Ucko <ucko@debian.org> Fri, 23 Aug 2002 22:34:17 -0400
ncbi-tools6 (6.1.20020426-3) unstable; urgency=low
* Remove getseq (which isn't terribly useful) to resolve conflict with
hmmer. (Closes: #147793)
-- Aaron M. Ucko <ucko@debian.org> Thu, 23 May 2002 21:20:47 -0400
ncbi-tools6 (6.1.20020426-2) unstable; urgency=low
* Enable large-file support; please let me know if this turns out to
break anything. (Closes: #144531)
* Don't build ncbithr.o or link against -lpthread unless that library
actually exists; should help on non-Linux ports.
-- Aaron M. Ucko <ucko@debian.org> Thu, 9 May 2002 19:26:35 -0400
ncbi-tools6 (6.1.20020426-1) unstable; urgency=low
* New upstream release; apparently fixes formatdb segfault on PowerPC
(closes: #144783).
* Some existing interfaces have changed, but not enough to justify
bumping the soname; if binaries built against older revisions of the
toolkit no longer work, try rebuilding them. (I don't believe this
affects any other Debian packages.)
* Updated man pages based on current help output.
* Patched both versions (regular and Vibrant) of common argument-
processing code to honor "--help" (closes: #144785).
-- Aaron M. Ucko <ucko@debian.org> Sun, 28 Apr 2002 18:30:43 -0400
ncbi-tools6 (6.1.20011220a-2) unstable; urgency=low
* Whoops, ncbi-data should replace pre-split versions of ncbi-tools6.
-- Aaron M. Ucko <ucko@debian.org> Thu, 4 Apr 2002 22:13:09 -0500
ncbi-tools6 (6.1.20011220a-1) unstable; urgency=low
* New upstream release, mostly appears to address some megablast issues.
* Deal with some 64-bit-cleanliness issues.
* Partially fix Cn3D lossage in #127224. (It still crashes, but later.)
* Fix copymat lossage with trailing spaces and improve its error
messages (closes: #138933).
* Split architecture-independent files into new ncbi-data package.
* Fix path to libXm.so.1 in vibrate.
-- Aaron M. Ucko <ucko@debian.org> Sun, 31 Mar 2002 10:33:49 -0500
2001
ncbi-tools6 (6.1.20011220-2) unstable; urgency=low
* Update manpages based on current help output. * Fix typo in description (ASN1 -> ASN.1). * Use $(CC) rather than gcc in makeshlb.unx. * Build asn2asn.
-- Aaron M. Ucko <ucko@debian.org> Fri, 28 Dec 2001 13:48:20 -0500
ncbi-tools6 (6.1.20011220-1) unstable; urgency=low
* New upstream release (Closes: #126625). * Bug #31724 is probably fixed by now, and too vague to do much of anything with anyway. (Closes: #31724; please supply useful details if reopening.) * Tweak rules so that the shlibs dependency is always (>= [latest.upstream.version]-1).
-- Aaron M. Ucko <ucko@debian.org> Thu, 27 Dec 2001 21:08:17 -0500
ncbi-tools6 (6.1.20010709-9) unstable; urgency=low
* Menu seems to be broken on some architectures, so drop build
dependency and add a copy of cmap.xpm to debian/.
* Slightly rework treatment of icons in debian/rules.
* Change "c-shell" to "tcsh|c-shell" in build-deps to address buildd
warnings.
* Add lintian overrides for new menu file.
-- Aaron M. Ucko <ucko@debian.org> Thu, 20 Dec 2001 11:47:53 -0500
ncbi-tools6 (6.1.20010709-8) unstable; urgency=low
* Change priority of debugging libraries to extra, per the override file. * Add menu file for ncbi-tools6-dev (asntool) and menu icons. * Add build-depends on ImageMagick and menu for icon creation. * Clean up internal script for creating menu files.
-- Aaron M. Ucko <ucko@debian.org> Tue, 18 Dec 2001 21:12:41 -0500
ncbi-tools6 (6.1.20010709-7) unstable; urgency=low
* Change section of debugging libraries from libs to devel.
-- Aaron M. Ucko <ucko@debian.org> Sun, 18 Nov 2001 20:36:31 -0500
ncbi-tools6 (6.1.20010709-6) unstable; urgency=low
* Introduce debugging libraries. (Closes: #38354).
-- Aaron M. Ucko <ucko@debian.org> Mon, 12 Nov 2001 12:08:44 -0500
ncbi-tools6 (6.1.20010709-5) unstable; urgency=low
* Sigh, the change in -4 intended to fix arm broke it instead; revert to
__arm__. Where'd I put that paper bag? ;-)
* Allow #cpu(...) and #machine(...) for all platforms.
* Downgrade "unknown platform" to a warning; the code mostly doesn't
care which PROC_XXX macro, if any, gets defined (and when it does, may
read too much from it; see below).
* Fix uses of PROC_XXX not to assume that MIPS -> IRIX or HPPA -> HP/UX.
* Use appropriate sysconf to get processor count.
-- Aaron M. Ucko <ucko@debian.org> Tue, 16 Oct 2001 13:26:49 -0400
ncbi-tools6 (6.1.20010709-4) unstable; urgency=low
* Also fix test for m68k. Why can't the macros be more consistent?
* Check everything else against the GCC sources and find that __arm__
should be arm.
* That should be all of these; apologies for the inconvenience.
-- Aaron M. Ucko <ucko@debian.org> Sat, 13 Oct 2001 14:50:03 -0400
ncbi-tools6 (6.1.20010709-3) unstable; urgency=low
* Fix test for powerpc in ncbilcl.lnx. (Check for two likely
definitions to be extra safe. ;-))
-- Aaron M. Ucko <ucko@debian.org> Fri, 12 Oct 2001 10:50:39 -0400
ncbi-tools6 (6.1.20010709-2) unstable; urgency=low
* Fix problems caught by autobuilders: * Rewrite clean rule to avoid mkdir. (Closes: #115103) * Add build-dependency on c-shell (ugh) for ln-if-absent. * * Whoops, my previous sweep missed two (old, minor) bugs on ncbi-tools6-dev: * 31724: I suspect I can close this by now, but don't have a whole lot of information to go on; could somebody on an Alpha investigate? * 38354: Debugging libraries would be a good idea, but I'm holding off until autobuilds succeed because adding more binary packages introduces ftpmaster wait. * * Keep shlib requirement at >= 6.1.20010709-1, because this version doesn't change anything relevant. * Add HTTP URL for HTML SDK docs. * Optimize out blast.REAL build.
-- Aaron M. Ucko <ucko@debian.org> Wed, 10 Oct 2001 18:42:44 -0400
ncbi-tools6 (6.1.20010709-1) unstable; urgency=low
* New upstream version; adds more apps, and includes newer BLAST (2.2.1
rather than 2.0.9). (Closes: #33451, #37966, #37967, #47369, #101168)
* Repackaged largely from scratch, acknowledging the convoluted nature
of the upstream build system.
* Put ncbi-tools6 and vibrant6 in section "libs", where they belong,
rather than "devel" (already correct in override file).
* Used the same form of my name in the control file and the changelog so
that katie doesn't think I'm making NMUs.
* Acknowledged my own last "NMU" (Closes: #100247, #103550, #104365)
* Enabled thread support for appropriate applications. (Closes: #35216)
* Added automatic fallback to /etc/ncbi if NCBI not set in the
environment; did away with no-longer-necessary wrappers.
* New binary packages for apps: ncbi-tools-bin and ncbi-tools-x11.
* Moved data to /usr/share/ncbi/data, since it's architecture-independent.
* Closes all existing bugs. Let's see how long that lasts...
and no fair filing silly reports just to thwart me. ;-)
* Dropped text version of old SDK docs in favor of pointer to online HTML
version.
* Don't link against Vibrant unnecessarily; instead, provide a wrapper
script (vibrate) with the same net effect.
* Added menu entries (using vibrate for apps it benefits).
* Added Lintian overrides to deal with cross-package menu entries.
* Registered with doc-base.
* Clean by Lintian 1.20.15, modulo the aforementioned overrides.
-- Aaron M. Ucko <ucko@debian.org> Sat, 6 Oct 2001 10:51:36 -0400
ncbi-tools6 (6.0.2-3) unstable; urgency=low
* Adopted. (Closes: #100247) * Acknowledge previous NMUs. (Closes: #103550, #104365) * Stop installing /usr/share/doc/ncbi-tools6/NCBI/fa2htgs/updateHtgsDoc; it was causing a Lintian error (executable file under /usr/share/doc) and not useful as-is anyway (referring to paths only valid on NCBI systems). * Honor DEB_BUILD_OPTIONS, and build without -g by default. * Above change should suffice to bump standards version to 3.5.6. Yay! * Now clean by Lintian 1.20.14.1.
-- Aaron M. Ucko <ucko@debian.org> Thu, 6 Sep 2001 11:05:49 -0400
ncbi-tools6 (6.0.2-2.2) unstable; urgency=low
* NMU
* The previous maintainer has resigned. Setting maintainer to Debian QA
Group <packages@qa.debian.org>.
* debian/ncbi-tools6-dev.README.debian: add final newline to shut diff up
* debian/control: tidied up package descriptions
* debian/rules: use dh_shlibdeps -l instead of LD_LIBRARY_PATH
* debian/{shlibs,vibrant6.shlibs}: while we're at it, why don't we have
some shlibs files to go with these shared library packages, like they
taught us in freshman year at Debian University
* Thanks to the above two fixes... (Closes: #104365)
-- Dr. Branden Robinson <branden@debian.org> Sat, 11 Aug 2001 20:57:17 -0500
ncbi-tools6 (6.0.2-2.1) unstable; urgency=low
* Non-maintainer upload.
* va_arg promotes shorts to ints. This is flagged as an error by
gcc >= 2.96. Closes: #103550
-- LaMont Jones <lamont@debian.org> Mon, 9 Jul 2001 21:39:34 -0600
ncbi-tools6 (6.0.2-2) unstable; urgency=low
* Adopted by new maintainer; closes: #92794, #92796, #92798, #48176 * Corrected typo in manpage for formatdb; closes: #38483 * Removed self-conflict of vibrant-dev; closes: #49712 * Changed the double installation of the copyright file by ncbi-tools6 and ncbi-tools6-dev into the same doc directory (and added a README.Debian in /usr/share/doc/ncbi-tools6-dev); closes: #51122, #77541, #56643 * Added the installation of README.blast. * Updated to newer standards version and added Build-Depends. * Added debhelper token to vibrant6.preinst to fix lintian warning. * Moved blast2 from section misc to science, because it is a tool that is exclusively useful for molecular biologists.
-- Dr. Guenter Bechly <gbechly@debian.org> Fri, 13 Apr 2001 15:12:10 +0200
1999
ncbi-tools6 (6.0.2-1.1) unstable; urgency=low
* NMU. * Recompiled against lesstif1. Closes: #48176
-- Adam Heath <doogie@debian.org> Mon, 25 Oct 1999 07:05:49 -0500
ncbi-tools6 (6.0.2-1) unstable; urgency=low
* New upstream release (includes Blast 2.0.8).
Addresses #33451 but does not solve it completely.
* Manual page. Closes #30227
* Add the vibrant package
* Proper symlinks in -dev packages. Closes #31619
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Mon, 15 Feb 1999 12:55:01 +0100
1998
ncbi-tools6 (6.0.1-1) unstable; urgency=low
* New upstream release * Add the blast package
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Thu, 12 Nov 1998 15:55:02 +0100
ncbi-tools6 (6.0-3) frozen; urgency=low
* Changes in the dependencies in control. Closes #28610 * Change in rules: the source package was broken and uncompilable. Closes #28978
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 28 Oct 1998 09:16:49 +0100
ncbi-tools6 (6.0-2) unstable; urgency=low
* Various lintian warnings suppressed * Not all files are copied in /usr/lib/ncbi/data, to save space
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Mon, 26 Oct 1998 15:59:25 +0100
ncbi-tools6 (6.0-1) unstable; urgency=low
* Initial Release. First public release.
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Tue, 22 Sep 1998 17:23:12 +0200