Software Packages in "sarge", Subsection science

achilles (2-4): An artificial life and evolution simulator
avida-base (2.0b7-3): Auto-adaptive genetic system for Artificial Life research
avida-qt-viewer (2.0b7-3): qt viewer for avida
avida-viewer (2.0b7-3): ncurses viewer for avida
biococoa.app (1.6.0-1): Sequence file format conversion for GNUstep
biomode (1.002-7): [Biology] An Emacs mode to edit genetic data
bioperl (1.4-1): Perl tools for computational molecular biology
blast2 (1:2.2.10.20041020-3): Basic Local Alignment Search Tool
boxshade (3.1.1-1): [Biology] Pretty-printing of multiple sequence alignments
cassbeam (1.0-5): A program for Cassegrain antenna modelling
cernlib (2004.11.04.dfsg-0sarge1): almost complete set of Debian Cernlib packages
cernlib-core (2004.11.04.dfsg-0sarge1): Cernlib main libraries and programs
cernlib-core-dev (2004.11.04.dfsg-0sarge1): Cernlib development headers, tools, and static libraries
cernlib-extras (2004.11.04.dfsg-0sarge1): miscellaneous Cernlib programs unlikely to be used by many
cernlib-montecarlo (2004.11.04.dfsg-0sarge1): Cernlib Monte Carlo libraries
chemtool (1.6.6-1): Chemical structures drawing program
clustalw (1.83-1) [non-free]: [Biology] Global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.13-2) [non-free]: [Biology] MPI-distributed global sequence alignment with ClustalW
clustalx (1.83-1) [non-free]: [Biology] GUI for clustalw
ctsim (4.3.1-4): Computed tomography simulator
ctsim: virtual package provided by ctsim-pentium4, ctsim-athlon
ctsim-athlon (4.3.1-4): Computed tomograpy simulator (Athlon optimized)
ctsim-help (4.3.1-4): Online help file for CTSim
ctsim-pentium4 (4.3.1-4): Computed tomograpy simulator (Pentium 4 optimized)
dcmtk (3.5.3-3): The OFFIS DICOM toolkit command line utilities
drawmap (2.5-1): draws customized maps, using raw USGS data files
dx (1:4.3.2-3): OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.2.0-1): Sample programs for the OpenDX Data Explorer
ent (1.0-4): A pseudorandom number sequence test program
fastdnaml (1.2.2-5): [Biology] A tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix91-1): [Biology] A faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix91-1): [Biology] Some papers about fastlink
felt (3.06-9): Package for introductory level finite element analysis
fityk (0.4.4-1): general-purpose nonlinear curve fitting and data analysis
fv (3.0-10): a tool for viewing and editing FITS format files
g3data (1:1.4.0.1-1): extract data from scanned graphs
garlic (1.4-1): A visualization program for biomolecules
gdal-bin (1.2.6-1): Geospatial Data Abstraction Library - Utility programs
gdis (0.86-1): molecular display
geant321 (2004.11.04.dfsg-0sarge1): [Physics] Particle detector description and simulation tool
geant321-data (2004.11.04.dfsg-0sarge1): [Physics] Data for Geant 3.21 detector simulator
genesis (2.2.1-5): general-purpose neural simulator
gff2aplot (2.0-1): pair-wise alignment-plots for genomic sequences in PostScript
gliese (1.1-12) [non-free]: Stellar data set from the Third Catalogue of Nearby Stars
gmt (3.4.4-1): Generic Mapping Tools
gmt-tutorial-pdf (3.4-1.1): Tutorial for the Generic Mapping Tools (PDF)
gperiodic (2.0.7-4): periodic table application
gpib-modules-source (3.2.03-2): kernel modules for various GPIB boards
gpx2shp (0.69-1): convert GPS or GPX file to ESRI Shape file
grass (6.0.0-1): Geographic Resources Analysis Support System
grass-doc (6.0.0-1): Geographic Resources Analysis Support System documentation
gri (2.12.9-2): a language for scientific illustration.
gri-el (2.12.9-2): Emacs major-mode for gri, a language for scientific graphics.
h5utils (1.9.1-1): HDF5 files visualization tools
hdf5-tools (1.6.2-3): Hierarchical Data Format 5 (HDF5) - Runtime tools
hmmer (2.1.4): models protein or nucleic acid sequences.
hodie (1.4-3): prints the date in latin
kalzium (4:3.3.2-3.sarge.1): chemistry teaching tool for KDE
kstars (4:3.3.2-3.sarge.1): desktop planetarium for KDE
kstars-data (4:3.3.2-3.sarge.1): data files for KStars desktop planetarium
kxterm (2004.11.04.dfsg-0sarge1): Cernlib's KUIP terminal emulator
leksbot (1.2-8): An explanatory dictionary of botanic and biological terms
libbio-ruby (0.6.2-2): bioruby tools for computational molecular biology
libbio-ruby1.8 (0.6.2-2): bioruby tools for computational molecular biology
libgpib-bin (3.2.03-2): libgpib support applications and configuration
loki (2.4.7.4-1): [Biology] MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-1): [Biology] Postscript manual for loki
mayavi (1.4-1): A scientific data visualization system
minc-tools (1.3-3): MNI medical image format tools
mn-fit (5.05-2): interactive analysis package for fitting data and histograms
mn-fit-common (5.05-2): common files for Mn_Fit
molphy (2.3b3-1) [non-free]: [Biology] Program Package for MOLecular PHYlogenetics
montecarlo-base (2004.11.04.dfsg-0sarge1): [Physics] Common files for Cernlib Monte Carlo libraries
mpb (1.4.2-6): MIT Photonic-Bands
mpb-mpi (1.4.2-6): MIT Photonic-Bands, parallel (mpich) version
mpqc (2.2.2-3): The Massively Parallel Quantum Chemistry Program
mpqc-support (2.2.2-3): Support programs and tools for MPQC
muscle (3.52-2): [Biology] multiple alignment program of protein sequences
muscle-doc (3.52-2): [Biology] documentation to sequence alignment program
ncbi-epcr (1.2.0-3): [Biology] Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-epcr-data (1.2.0-3): [Biology] NCBI public STS data
ncbi-tools-bin (6.1.20041020-3): NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20041020-3): NCBI libraries for biology applications (X-based utilities)
netcdf-bin (3.5.0-7.1): Support programs for NetCDF.
netcdfg3 (3.5.0-7.1): An interface for scientific data access.
njplot (0.20041129-2): [Biology] A tree drawing program
openbabel (1.100.2-2): Convert and manipulate chemical data files
openuniverse (1.0beta3.1-2): 3D Universe Simulator
openuniverse-common (1.0beta3.1-2): 3D Universe Simulator data files
paje.app (1.3.2-3): generic visualization tool (Gantt chart and more)
paw (2004.11.04.dfsg-0sarge1): Physics Analysis Workstation - a graphical analysis program
paw++ (2004.11.04.dfsg-0sarge1): Physics Analysis Workstation (Lesstif-enhanced version)
paw++-static (2004.11.04.dfsg-0sarge1): Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (2004.11.04.dfsg-0sarge1): Physics Analysis Workstation (common files)
paw-demos (2004.11.04.dfsg-0sarge1): Physics Analysis Workstation examples and tests
paw-static (2004.11.04.dfsg-0sarge1): Physics Analysis Workstation - a graphical analysis program
php4-gpib (3.2.03-2): libgpib php bindings
phylip (1:3.6.1-2) [non-free]: [Biology] A package of programs for inferring phylogenies
phylip-doc (1:3.6.1-2) [non-free]: [Biology] A package of programs for inferring phylogenies
planets (0.1.12-4): Gravitation simulation of planetary bodies
polyxmass (0.8.7): Mass spectrometry software framework
polyxmass-bin (0.8.7-1): Mass spectrometry framework - GUI program
polyxmass-common (0.8.5-1): Mass spectrometry framework - essential polymer chemistry data
polyxmass-data (0.8.4-1): Mass spectrometry framework - supplementary chemical data
praat (4.3.07-1): program for speech analysis and synthesis
proj (4.4.9-1): Cartographic projection filter and library
pymol (0.97-2): An OpenGL Molecular Graphics System written in Python
qgis (0.6.0-2): Geographic Information System (GIS)
qgis-dev (0.6.0-2): QGIS Geographic Information System - development files
qmc (0.94-3): Quine McClusky Simplification Tool
rasmol (2.7.2.1.1-3): Visualize biological macromolecules
rasmol-doc (2.7.2.1.1-3): Documentation for rasmol
readseq (1-6): [Biology] Conversion between sequence formats
saods9 (3.0.3-1): image display tool for astronomy
seaview (20021127-4) [contrib]: [Biology] A multiple sequence alignment editor
seesat5 (0.90.10-1): a satellite location program
spass (2.1-3): An automated theorem prover for first-order logic with equality
ssystem (1.6-15): 3D solar system simulator
starplot (0.95.2-2): 3-dimensional perspective star map viewer
stars (0.12+1-1) [contrib]: star map program that draws the night sky
stellarium (0.6.2-2): real-time photo-realistic sky generator
stellarium-data (0.6.2-2): datafiles for Stellarium, a real-time photo-realistic sky generator
survex (1.0.34): cave surveying and mapping software
survex-aven (1.0.34): sophisticated cave survey viewer for Survex
survex-svxedit (1.0.34): survey data editor for Survex
tessa (0.3.1-1): simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-1): simulation of 3D optical systems using FDTD on LAM-MPI clusters
textopo (1.3-2): [Biology] LaTeX presentation of topology of transmembrane proteins
therion (0.3.6-1): Cave surveying - 2D and 3D drawing software
tigr-glimmer (2.13-1): [Biology] Gene detection in archea and bacteria
tochnog (20010124-2.1): A free implicit/explicit finite element analysis program
transcalc (0.13-1.1): microwave and RF transmission line calculator
tree-puzzle (5.2-1): [Biology] Reconstruction of phylogenetic trees by maximum likelihood
treetool (2.0.2a-2) [non-free]: [Biology] An interactive tool for displaying trees
units-filter (1.0-3): Parser for expressions concerning physical values
viewmol (2.4.1-6): A graphical front end for computational chemistry programs.
xbs (0-7.2): 3-d models and movies of molecules
xdrawchem (1.9.4-3): an open-source version of ChemDraw
xmakemol (5.14-1): A program for visualizing atomic and molecular systems
xmakemol-gl (5.14-1): A program for visualizing atomic and molecular systems
xplot (1.19-6): a simple x-y column data plotter for X.
xtide (2.6.4-1): provides tide and current predictions
xtide-data (20040203-1): Harmonics data for xtide
yale (1.0-11) [non-free]: Stellar data set from the Third Catalogue of Nearby Stars
ygraph (0.15-1): Visualize one-dimensional scientific data