Software Packages in "woody", Subsection science

achilles (2-2.0.1 [powerpc], 2-2 [alpha, arm, hppa, i386, ia64, m68k, mips, mipsel, s390, sparc]): An artificial life and evolution simulator
biomode (1.002-6): [Biology] An Emacs mode to edit genetic data
bioperl (1.0-1): [Biology] Perl tools for computational molecular biology
blast2 (6.1.20011220a-2): Basic Local Alignment Search Tool
celestia (1.2.2-5.0.1 [hppa], 1.2.2-5 [alpha, arm, i386, ia64, m68k, mips, mipsel, powerpc, s390, sparc]): A real-time visual space simulation
chemtool (1.5-1): GTK-based chemical structures drawing program
clustalw (1.82-3) [non-free]: [Biology] A multiple sequence alignment program
clustalx (1.82-3) [non-free]: [Biology] A GUI for clustalw
drawmap (2.3-1.0.1 [hppa], 2.3-1 [alpha, arm, i386, ia64, m68k, mips, mipsel, powerpc, s390, sparc]): draws customized maps, using raw USGS data files
dstooltk (2.0-4): dynamical systems investigation (Tk version)
dx (1:4.1.3-1.1): OpenDX (IBM Visualization Data Explorer) - main package
dx-dev (1:4.1.3-1.1): OpenDX (IBM Visualization Data Explorer) - development files
dx-doc (1:4.1.3-1.1): OpenDX (IBM Visualization Data Explorer) - documentation
ent (1.0-1): A pseudorandom number sequence test program
fastdnaml (1.2.2-4): [Biology] A tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix81-2): [Biology] A faster version of pedigree programs of Linkage
felt (3.06-4): Package for introductory level finite element analysis.
felt-doc (3.06-4): FElt User's Guide and Reference Manual.
fv (3.0-7): a tool for viewing and editing FITS format files
g3data (1.08-1): extract data from scanned graphs
garlic (1.1-2): [Chemistry] a free molecular visualization program
gdis (0.74.0.pre1+-3): molecular display
genesis (2.2-2): General-purpose neural simulator
ghemical (0.82-1): A GNOME molecular modelling environment
gmt (3.4-3): Generic Mapping Tools
gmt-doc-pdf (3.4-1): PDF docs for the Generic Mapping Tools
gmt-tutorial (3.4-1): Data files needed to reproduce the tutorial examples of GMT
gmt-tutorial-pdf (3.4-1): Tutorial for the Generic Mapping Tools (PDF)
gperiodic (1.3.3-0.2): periodic table application
gri (2.8.7-1): a language for scientific illustration.
hmmer (2.1.4): models protein or nucleic acid sequences.
hodie (1.4-1): prints the date in latin
iraf (2.11.3-2) [contrib]: Image Reduction and Analysis Facility (astronomy/imaging)
iraf-dev (2.11.3-2) [contrib]: Bootstrap header files for IRAF
iraf-ibin (2.11.3-3) [contrib]: IRAF - Core i386 Linux binaries
iraf-noaobin (2.11.3-2) [contrib]: IRAF - NOAO i386 Linux binaries
kstars (0.8.5-2): Desktop planetarium for KDE2
mayavi (1.1-2): A scientific data visualization system.
molphy (2.3b3-1) [non-free]: [Biology] Program Package for MOLecular PHYlogenetics
mpqc (2.0.4-1.1 [hppa, i386, ia64, m68k, powerpc, s390, sparc], 2.0.4-1 [alpha]): The Massively Parallel Quantum Chemistry Program
ncbi-tools-bin (6.1.20011220a-2): NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20011220a-2): NCBI libraries for biology applications (X-based utilities)
netcdf-bin (3.5.0-7): Support programs for NetCDF.
netcdf-doc (1:3a-2): Documentation for NetCDF.
netcdf-perl (1.2.1-6): A perl extension for accessing netCDF datasets.
netcdfg3 (3.5.0-7): An interface for scientific data access.
njplot (0.0-4): [Biology] A tree drawing program
openbabel (1.99-1): Convert and manipulate chemical data files
proj (4.4.5-1): Cartographic projection filter and library
rasmol (2.6b2-6.0.1 [s390], 2.6b2-6 [alpha, arm, hppa, i386, ia64, m68k, mips, mipsel, powerpc, sparc]): molecule visualization and rendering
readseq (1-3): [Biology] Conversion between sequence formats
rumba-manifold-demo (1.0.1-1): Sample programs that use RUMBA brain imaging main library
rumba-utils (1.0.1-2): RUMBA brain imaging utility programs
rumbaview (1.0.1-1): RUMBA project brain imaging viewer
seesat5 (0.90.9-0): a satellite location program
ssystem (1.6-11): solar system flight simulator
starplot (0.92.3-3): A 3-dimensional perspective star map viewer
tochnog (20010124-1.1.1 [s390], 20010124-1.1 [alpha, arm, hppa, i386, ia64, m68k, mips, mipsel, powerpc, sparc]): A free implicit/explicit finite element analysis program
transcalc (0.1-2): microwave and RF transmission line calculator
tree-puzzle (5.0-3): [Biology] Reconstruction of phylogenetic trees by maximum likelihood
treetool (2.0.2a-1) [non-free]: [Biology] An interactive tool for displaying trees
viewmol (2.3-5): A graphical front end for computational chemistry programs.
vis5d (5.2abeta5-3): Visualizes data made by numerical weather models etc.
vis5d-doc (5.2abeta5-3): Documentation for the Vis5D visualization system
x11iraf (1.2-4) [contrib]: X utilities for IRAF (Image Reduction Analysis Facility)
xbs (0-6): 3-d models and movies of molecules
xdrawchem (1.0-0.1): an open-source version of ChemDraw
xmakemol (5.03-2): A program for visualizing atomic and molecular systems
xmakemol-gl (5.03-2): A program for visualizing atomic and molecular systems
xplot (1.19-5) [contrib]: a simple x-y column data plotter for X.
xtide (2.4-1.0.1 [ia64], 2.4-1 [alpha, arm, hppa, i386, m68k, mips, mipsel, powerpc, s390, sparc]): provides tide and current predictions
xtide-data (20010920-1): Harmonics data for xtide